PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_13999_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 2017aa    MW: 220232 Da    PI: 8.6931
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_13999_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-0618461867627
                      -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                      C++f +tG C+ G++Ck +H++
  Neem_13999_f_3 1846 CPTFEATGSCSLGSKCKLHHPK 1867
                      *****************99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.35717271756IPR000571Zinc finger, CCCH-type
SMARTSM003560.01117281755IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.70918181839IPR000571Zinc finger, CCCH-type
SMARTSM003561.318181844IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.20618401868IPR000571Zinc finger, CCCH-type
SMARTSM003560.818451867IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2017 aa     Download sequence    Send to blast
MRRSKRSAAR RKQEELSRHA GATQSYGSSV HSSVQFHERS SDFVHRIPIH DDRQHQHQQQ  60
QHRQRLLADF DARPGRWDPP RNVPDHRPLV GSLEHRHQLD HRPISPYRSV NSKIKHELDA  120
SSYRFRERHK NDGFEFEYKT SSSSNQRAEF VPHRSHFVPD SDRLNSSNYD SQHSSQFDSN  180
SLVRNNVRNG VFDRAAMRER ESLIERGSNS ENISDGVRGF IGKREFYGLD SGRYGNNRGS  240
RENSYEYNRT PWKQVQKKSA LLRIQKPSYR NRDEEELHYS GYEMKSGSFR GKEQVLFSDR  300
EVGEEEEREM SPVELDVMAS SKDRSRSQMN KPSDSGVKLD SGRVVVNNIA SSDNRDLKQS  360
EKEVAPSGVN MGDIKSQPCS TGNSNLLTKI SVEMSKDIVP DKSGTGVGAG KTSPVKVAKK  420
KRVVKKVVKK AMNPILPVSS SQPIKKLGES RKEEGSTLNA PAAPVQKMGV KPSKEKITSA  480
MPFGHLVDFR PYPNGKNILA GNGKVSGSPE AAVVLKEVST DNDSRVSSVP KIKRKRTGSI  540
SPLASSSRKE TKIDEDAVNA DNGSDALHSV SNSDKNPIKS LNENTGSDIS TVEGAGQQCR  600
HNSSSSLLDY SATKEFPEIL FSARRNINSD LLSLEENRKL GSLVNTSSTS HGMNTTVAFD  660
NDSVGSQEKI TNSEVGIINA SNKQPCKDLM GTTVNSSTAE GFPSGEVSAL SSLEEIGVGN  720
ASIYADCSNH GKCSVTASEN VNIINTKEIN IGTGDYNGKQ LAPNDVTISF ENVVTEGFPN  780
TLFSVGSSEE DMLNTTNKSK VMTSLSDLPD ATITDMSMEP VKAVGPAQSV DTTLKLSTKV  840
FSPAEVRVTS SLDVGLQCCS DGSGVFNGGN LAGGCCEAKV SDSSVYIGIS PERRKRRKFS  900
ACHPGLSSTA ASESSEGPVT PDLPTAGVEL PSISTDGQIQ IKEGVAVSNM DTLGDSNLPP  960
CPDGITFLCE NSLAQVSSEV AVSVSRDVSR VADDGLKVEH PSATSSSAFG EVEISNAPSC  1020
CPPGSESTQR VNENPVIDGS NSNEVMRMDD SKTERMEAVV AKEQGKACSE AAQFETPESQ  1080
SADSSQVLPT YVESDGCLLE KGDLPSVSTY PALAADADGV STTNSNDEMM EFDSPSNMCS  1140
PEILSNVAAM QMLNHESSSQ IPNENACEID KIPTEKPVLE ANSNLSAHTS PSEHAKINLK  1200
SDCIVESGRL VVRRTMLLPS HDVKNTGHSL ALTSEETYGK KNQPSHTVSR INPSCSSSVF  1260
SASRNTTSST CIRKPRTWHR TESSSASPVP GNKSSLCTVP QQSQLPKNVA KFQSTSYIRK  1320
GNSLVRKPAP VAALPQVAHG LTSSVYRLNS LGISESKKTT GSDSTVDVIH PPNFLRMGGG  1380
NAPLERPRTP PLPVVTKVPN RTTNLAVDCT TSPLAEPLPN GCSETTSDPQ KSMEINSELS  1440
ASSAHLKISE TPAKQTGLAN STEIQGEPND GTLGTANEKR ITYVKQKSNQ LIAASGDCAL  1500
SVQDPDKTQV LTSEGYYKRR KNQLIRTSLE SHINPTVTSV DGAMTSEGEK ASNDIFSRSF  1560
SKKRSFKVGK KIRKPLKFSL VWTLNGLQSS KGSDHSSYHQ KEATLAVAAV EKKRQQNGVE  1620
SFASKTKNRS HSAKSRIFRI GSVRYKMDSS RRTLQRISDD GSSCTAAPNL EKNAKKSYIP  1680
RRLVIGNDEY VRIGNGNQLI RDPKKRARVL ASEKVRWSLH TARLRLAKRR KYCQFFTRFG  1740
KCNKDDGKCP YMHDPSKIAV CTKSFQNECQ IVPISCKVFY HAISWVLFDK LNIQRILTSL  1800
LSGLCTNKNC PYRHVHVNPN ASTCEGFLKG YCADGNECRK KHSYVCPTFE ATGSCSLGSK  1860
CKLHHPKSRS KGKKSRGSRK QKSTYGRYFG SMLVDDSEPQ MTRMSESHST QDNIDLFIEG  1920
KLVDYISLDF SNEEAREAND ALCGQTTFPD NDASDLQSDD LDELIKPIRI MNCHFCVDEQ  1980
ILQDKGIISS FSGGAPRIIQ VTGRKPAFVG KRSVQIV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4841133e-76AM484113.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X030754.11, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472862.10.0PREDICTED: uncharacterized protein At1g21580
TrEMBLA0A067GYA90.0A0A067GYA9_CITSI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57801012